* Update worker docs to remove group endpoints.
* Removes an unused parameter to `ApplicationService`.
* Break dependency between media repo and groups.
* Avoid copying `m.room.related_groups` state events during room upgrades.

The presence of this method was confusing, and mostly present for backwards
compatibility. Let's get rid of it.

Part of #11733

This reverts commit 158d73eb.

Revert "Sort internal changes in changelog"
Revert "Update CHANGES.md"
Revert "1.49.0rc1"
Revert "Revert "Move `glob_to_regex` and `re_word_boundary` to `matrix-python-common` (#11505) (#11527)"
Revert "Refactors in `_generate_sync_entry_for_rooms` (#11515)"
Revert "Correctly register shutdown handler for presence workers (#11518)"
Revert "Fix `ModuleApi.looping_background_call` for non-async functions (#11524)"
Revert "Fix 'delete room' admin api to work on incomplete rooms (#11523)"
Revert "Correctly ignore invites from ignored users (#11511)"
Revert "Fix the test breakage introduced by #11435 as a result of concurrent PRs (#11522)"
Revert "Stabilise support for MSC2918 refresh tokens as they have now been merged into the Matrix specification. (#11435)"
Revert "Save the OIDC session ID (sid) with the device on login (#11482)"
Revert "Add admin API to get some information about federation status (#11407)"
Revert "Include bundled aggregations in /sync and related fixes (#11478)"
Revert "Move `glob_to_regex` and `re_word_boundary` to `matrix-python-common` (#11505)"
Revert "Update backward extremity docs to make it clear that it does not indicate whether we have fetched an events' `prev_events` (#11469)"
Revert "Support configuring the lifetime of non-refreshable access tokens separately to refreshable access tokens. (#11445)"
Revert "Add type hints to `synapse/tests/rest/admin` (#11501)"
Revert "Revert accidental commits to develop."
Revert "Newsfile"
Revert "Give `tests.server.setup_test_homeserver` (nominally!) the same behaviour"
Revert "Move `tests.utils.setup_test_homeserver` to `tests.server`"
Revert "Convert one of the `setup_test_homeserver`s to `make_test_homeserver_synchronous`"
Revert "Disambiguate queries on `state_key` (#11497)"
Revert "Comments on the /sync tentacles (#11494)"
Revert "Clean up tests.storage.test_appservice (#11492)"
Revert "Clean up `tests.storage.test_main` to remove use of legacy code. (#11493)"
Revert "Clean up `tests.test_visibility` to remove legacy code. (#11495)"
Revert "Minor cleanup on recently ported doc pages  (#11466)"
Revert "Add most of the missing type hints to `synapse.federation`. (#11483)"
Revert "Avoid waiting for zombie processes in `synctl stop` (#11490)"
Revert "Fix media repository failing when media store path contains symlinks (#11446)"
Revert "Add type annotations to `tests.storage.test_appservice`. (#11488)"
Revert "`scripts-dev/sign_json`: support for signing events (#11486)"
Revert "Add MSC3030 experimental client and federation API endpoints to get the closest event to a given timestamp (#9445)"
Revert "Port wiki pages to documentation website (#11402)"
Revert "Add a license header and comment. (#11479)"
Revert "Clean-up get_version_string (#11468)"
Revert "Link background update controller docs to summary (#11475)"
Revert "Additional type hints for config module. (#11465)"
Revert "Register the login redirect endpoint for v3. (#11451)"
Revert "Update openid.md"
Revert "Remove mention of OIDC certification from Dex (#11470)"
Revert "Add a note about huge pages to our Postgres doc (#11467)"
Revert "Don't start Synapse master process if `worker_app` is set (#11416)"
Revert "Expose worker & homeserver as entrypoints in `setup.py` (#11449)"
Revert "Bundle relations of relations into the `/relations` result. (#11284)"
Revert "Fix `LruCache` corruption bug with a `size_callback` that can return 0 (#11454)"
Revert "Eliminate a few `Any`s in `LruCache` type hints (#11453)"
Revert "Remove unnecessary `json.dumps` from `tests.rest.admin` (#11461)"
Revert "Merge branch 'master' into develop"

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changes made to e713855d.

Co-authored-by: Brendan Abolivier <babolivier@matrix.org>

Co-authored-by: Patrick Cloke <clokep@users.noreply.github.com>

The following scenarios would halt the user directory updater:

- user joins room
- user leaves room
- user present in room which switches from private to public, or vice versa.

for two classes of users:

- appservice senders
- users missing from the user table.

If this happened, the user directory would be stuck, unable to make forward progress.

Exclude both cases from the user directory, so that we ignore them.

Co-authored-by: Eric Eastwood <erice@element.io>
Co-authored-by: reivilibre <oliverw@matrix.org>
Co-authored-by: Sean Quah <8349537+squahtx@users.noreply.github.com>
Co-authored-by: Brendan Abolivier <babolivier@matrix.org>

Fix a long-standing bug where a batch of user directory changes would be
silently dropped if the server left a room early in the batch.

* Pull out `wait_for_background_update` in tests

Co-authored-by: Patrick Cloke <clokep@users.noreply.github.com>
Co-authored-by: Richard van der Hoff <1389908+richvdh@users.noreply.github.com>

There are two steps to rebuilding the user directory:

1. a scan over rooms, followed by
2. a scan over local users.

The former reads avatars and display names from the `room_memberships`
table and therefore contains potentially private avatars and
display names. The latter reads from the the `profiles` table which only
contains public data; moreover it will overwrite any private profiles
that the rooms scan may have written to the user directory. This means
that the rebuild could leak private user while the rebuild was in
progress, only to later cover up the leaks once the rebuild had completed.

This change skips over local users when writing user_directory rows
when scanning rooms. Doing so means that it'll take longer for a rebuild
to make local users searchable, which is unfortunate. I think a future
PR can improve this by swapping the order of the two steps above. (And
indeed there's more to do here, e.g. copying from `profiles` without
going via Python.)

Small tidy-ups while I'm here:

* Remove duplicated code from test_initial. This was meant to be pulled into `purge_and_rebuild_user_dir`.
* Move `is_public` before updating sharing tables. No functional change; it's still before the first read of `is_public`.
* Don't bother creating a set from dict keys. Slightly nicer and makes the code simpler.

Co-authored-by: Richard van der Hoff <1389908+richvdh@users.noreply.github.com>

* Introduce `should_include_local_users_in_dir`

We exclude three kinds of local users from the user_directory tables. At
present we don't consistently exclude all three in the same places. This
commit introduces a new function to gather those exclusion conditions
together. Because we have to handle local and remote users in different
ways, I've made that function only consider the case of remote users.
It's the caller's responsibility to make the local versus remote
distinction clear and correct.

A test fixup is required. The test now hits a path which makes db
queries against the users table. The expected rows were missing, because
we were using a dummy user that hadn't actually been registered.

We also add new test cases to covert the exclusion logic.

----

By my reading this makes these changes:

* When an app service user registers or changes their profile, they will
  _not_ be added to the user directory. (Previously only support and
  deactivated users were excluded). This is consistent with the logic that
  rebuilds the user directory. See also [the discussion
  here](https://github.com/matrix-org/synapse/pull/10914#discussion_r716859548

).
* When rebuilding the directory, exclude support and disabled users from
  room sharing tables. Previously only appservice users were excluded.
* Exclude all three categories of local users when rebuilding the
  directory. Previously `_populate_user_directory_process_users` didn't do
  any exclusion.

Co-authored-by: Richard van der Hoff <1389908+richvdh@users.noreply.github.com>

* Pull out GetUserDirectoryTables helper
* Don't rebuild the dir in tests that don't need it

In #10796 I changed registering a user to add directory entries under.
This means we don't have to force a directory regbuild in to tests of
the user directory search.

* Move test_initial to tests/storage
* Add type hints to both test_user_directory files

Co-authored-by: Richard van der Hoff <1389908+richvdh@users.noreply.github.com>

Part of #9744

Removes all redundant `# -*- coding: utf-8 -*-` lines from files, as python 3 automatically reads source code as utf-8 now.

`Signed-off-by: Jonathan de Jong <jonathan@automatia.nl&gt;`>

* Use the simple dictionary in fts for the user directory

* Clarify naming

This is in preparation for having multiple data stores that offer
different functionality, e.g. splitting out state or event storage.