Upgrade mypy to 0.931, mypy-zope to 0.3.5 and fix new complaints.

 - Update black version to the latest
 - Run black auto formatting over the codebase
    - Run autoformatting according to [`docs/code_style.md
`](https://github.com/matrix-org/synapse/blob/80d6dc9783aa80886a133756028984dbf8920168/docs/code_style.md)
 - Update `code_style.md` docs around installing black to use the correct version

We were running some linters on some files and some on others. Extract a common
setting and use it everywhere.

First some background: StreamChangeCache is used to keep track of what "entities" have 
changed since a given stream ID. So for example, we might use it to keep track of when the last
to-device message for a given user was received [1], and hence whether we need to pull any to-device messages from the database on a sync [2].

Now, it turns out that StreamChangeCache didn't support more than one thing being changed at
a given stream_id (this was part of the problem with #7206). However, it's entirely valid to send
to-device messages to more than one user at a time.

As it turns out, this did in fact work, because *some* methods of StreamChangeCache coped
ok with having multiple things changing on the same stream ID, and it seems we never actually
use the methods which don't work on the stream change caches where we allow multiple
changes at the same stream ID. But that feels horribly fragile, hence: let's update
StreamChangeCache to properly support this, and add some typing and some more tests while
we're at it.

[1]: https://github.com/matrix-org/synapse/blob/release-v1.12.3/synapse/storage/data_stores/main/deviceinbox.py#L301
[2]: https://github.com/matrix-org/synapse/blob/release-v1.12.3/synapse/storage/data_stores/main/deviceinbox.py#L47-L51